nf-core MCP Server
JSON →Manage and navigate local nf-core pipeline repositories.
Install
npx -y nf-core-mcp Tools · 3
- list-pipelines Lists all nf-core pipelines in the workspace. Shows configuration file status. No parameters required.
- get-pipeline-modules Gets module information from a pipeline. Parameters: pipeline (Pipeline name: rnaseq, sarek, or modules).
- search-pipelines Searches through pipeline files. Parameters: query (Search query), pipeline (optional, specific pipeline to search).