SCMCP
JSON →A natural language interface for single-cell RNA sequencing (scRNA-Seq) analysis, supporting various modules from IO to enrichment.
Install
pip install scmcp Tools · 7
- IO module Read and write scRNA-Seq data with natural language
- Preprocessing module Filtering, quality control, normalization, scaling, highly-variable genes, PCA, Neighbors
- Tool module Clustering, differential expression, etc.
- Plotting module Violin plots, heatmaps, dotplots
- Cell-cell communication analysis Analyze cell-cell communication
- Pseudotime analysis Perform pseudotime analysis
- Enrichment analysis Perform enrichment analysis
Links
★ 15 GitHub stars