BioMCP
JSON →Connects AI assistants to authoritative biomedical data sources like PubMed and ClinicalTrials.gov, enabling natural language queries.
Install
pip install biomcp-cli Tools · 11
- search Search for entities (article, gene, variant, drug, disease, etc.) with filters for discovery
- suggest Route a biomedical question to a shipped worked example and two starter commands
- discover Concept resolution before entity selection
- get Focused detail on an entity by ID with optional sections
- enrich Gene-set enrichment analysis via g:Profiler
- batch Parallel gets for up to 10 focused calls in one command
- study Analyze local datasets with query, cohort, survival, compare, and co-occurrence workflows
- article citations Get citations for a known article
- article references Get references for a known article
- article recommendations Get recommendations for a known article
- article entities Get entities mentioned in a known article
Environment variables
S2_API_KEYNCBI_API_KEYOPENFDA_API_KEYNCI_API_KEYONCOKB_TOKENALPHAGENOME_API_KEYDISGENET_API_KEY
Links
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