{"slug":"genomoncology/biomcp","name":"BioMCP","description":"Connects AI assistants to authoritative biomedical data sources like PubMed and ClinicalTrials.gov, enabling natural language queries.","category":"database","tags":[],"official":false,"stars":517,"transport":"http","install":[{"cmd":"pip install biomcp-cli","imports":[]}],"tools":[{"name":"search","description":"Search for entities (article, gene, variant, drug, disease, etc.) with filters for discovery"},{"name":"suggest","description":"Route a biomedical question to a shipped worked example and two starter commands"},{"name":"discover","description":"Concept resolution before entity selection"},{"name":"get","description":"Focused detail on an entity by ID with optional sections"},{"name":"enrich","description":"Gene-set enrichment analysis via g:Profiler"},{"name":"batch","description":"Parallel gets for up to 10 focused calls in one command"},{"name":"study","description":"Analyze local datasets with query, cohort, survival, compare, and co-occurrence workflows"},{"name":"article citations","description":"Get citations for a known article"},{"name":"article references","description":"Get references for a known article"},{"name":"article recommendations","description":"Get recommendations for a known article"},{"name":"article entities","description":"Get entities mentioned in a known article"}],"env_vars":["S2_API_KEY","NCBI_API_KEY","OPENFDA_API_KEY","NCI_API_KEY","ONCOKB_TOKEN","ALPHAGENOME_API_KEY","DISGENET_API_KEY"],"auth_type":"none","github":"https://github.com/genomoncology/biomcp","homepage":"","server_url":"","status":"active","source":"mcpservers.org","updated_at":"Thu May 28"}