{"library":"spotiphy","title":"Spotiphy","type":"library","description":"Integrated pipeline for spatial transcriptomics deconvolution and decomposition to generate pseudo single-cell resolution images. Current version 0.3.1, active development on GitHub.","language":"python","status":"active","last_verified":"Sat May 09","install":{"commands":["pip install spotiphy","pip install git+https://github.com/jyyulab/Spotiphy.git"],"cli":null},"imports":["from spotiphy import Spotiphy"],"auth":{"required":false,"env_vars":[]},"links":{"homepage":null,"github":"https://github.com/jyyulab/Spotiphy","docs":null,"changelog":null,"pypi":"https://pypi.org/project/spotiphy/","npm":null,"openapi_spec":null,"status_page":null,"smithery":null},"quickstart":{"code":"from spotiphy import Spotiphy\n\n# Initialize with default parameters\nsp = Spotiphy()\n\n# Set required files (paths must exist)\nsp.set_dataset('spatial_folder', 'counts.h5ad')\n\n# Run pipeline\nsp.run()","lang":"python","description":"Basic usage: load Spotiphy class, set dataset, and run.","tag":null,"tag_description":null,"last_tested":null,"results":[]},"compatibility":null}