{"library":"scanpy","type":"library","category":null,"description":"Scanpy is a scalable toolkit for analyzing single-cell gene expression data built jointly with anndata. It provides comprehensive functionalities for preprocessing, visualization, clustering, trajectory inference, and differential expression testing. The Python-based implementation efficiently handles datasets of more than one million cells. Currently at version 1.12.1, it maintains a regular release cadence with major, minor, and patch releases.","language":"python","status":"active","version":"1.12.1","tags":["single-cell","bioinformatics","data-analysis","genomics","RNA-seq","anndata"],"install":[{"cmd":"pip install scanpy","imports":["import scanpy as sc","import anndata as ad"]},{"cmd":"pip install 'scanpy[leiden]'","imports":[]}],"homepage":"https://scanpy.org","github":"https://github.com/scverse/scanpy","docs":"https://scanpy.readthedocs.io/","changelog":null,"pypi":"https://pypi.org/project/scanpy/","npm":null,"openapi_spec":null,"status_page":null,"smithery":null,"compatibility":{"summary":{"python_range":"3.10–3.9","success_rate":50,"avg_install_s":27.3,"avg_import_s":8.03,"wheel_type":"wheel"},"url":"https://checklist.day/v1/registry/scanpy/compatibility"},"provenance":{"verified_status":"passing","verified_at":"Sun Jun 28","last_verified":"Sun Jun 28","next_check":"Tue Jul 28","install_tag":null}}