{"library":"pysam","type":"library","category":null,"description":"Pysam is a Python module for reading, manipulating, and writing genomic datasets. It is a lightweight wrapper of the HTSlib API, providing facilities to work with SAM/BAM/CRAM, VCF/BCF, BED, GFF/GTF, FASTA/FASTQ files, and access samtools/bcftools command-line functionality. The module supports compression and random access through indexing. Pysam is actively maintained with regular releases, often wrapping new versions of the underlying htslib, samtools, and bcftools C libraries.","language":"python","status":"active","version":"0.23.3","tags":["genomics","bioinformatics","DNA sequencing","SAM","BAM","CRAM","VCF","BCF","FASTA","FASTQ","NGS"],"install":[{"cmd":"pip install pysam","imports":["import pysam","from pysam import AlignmentFile","from pysam import VariantFile","from pysam import FastaFile"]},{"cmd":"conda install pysam -c bioconda","imports":[]}],"homepage":null,"github":"https://github.com/pysam-developers/pysam","docs":"https://pysam.readthedocs.io/","changelog":"https://pysam.readthedocs.io/en/stable/release.html","pypi":"https://pypi.org/project/pysam/","npm":null,"openapi_spec":null,"status_page":null,"smithery":null,"compatibility":{"summary":{"python_range":"3.10–3.9","success_rate":100,"avg_install_s":2.3,"avg_import_s":0.08,"wheel_type":"wheel"},"url":"https://checklist.day/v1/registry/pysam/compatibility"},"provenance":{"verified_status":"passing","verified_at":"Sun Jun 28","last_verified":"Sun Jun 28","next_check":"Tue Jul 28","install_tag":null}}