{"library":"prody","title":"ProDy: Protein Dynamics Analysis","description":"ProDy is an open-source Python package for protein dynamics analysis, including structure analysis, normal mode analysis (ANM, GNM, PCA), sequence analysis, trajectory parsing, and protein-ligand interactions. Current version 2.6.1 supports Python >=3.10, NumPy 2, and Python 3.12. Releases occur roughly every few months with bug fixes and new features.","language":"python","status":"active","last_verified":"Mon Apr 27","install":{"commands":["pip install prody"],"cli":{"name":"prody","version":""}},"imports":["from prody import parsePDB","from prody import ANM","from prody import calcRMSD"],"auth":{"required":false,"env_vars":[]},"quickstart":{"code":"from prody import *\nfrom prody import parsePDB, ANM, calcModes\npdb = parsePDB('1ake')\nanm = ANM('example')\nanm.buildHessian(pdb)\nmodes = calcModes(anm)\nprint(modes[:3])","lang":"python","description":"Parse a PDB, build ANM Hessian, and compute normal modes.","tag":null,"tag_description":null,"last_tested":null,"results":[]},"compatibility":null}