{"slug":"bio-mcp/bio-mcp-fastqc","name":"Bio-MCP FastQC Server","description":"Provides quality control for biological sequence data using the FastQC and MultiQC tools.","category":"development","tags":[],"official":false,"stars":0,"transport":null,"install":[{"cmd":"pip install multiqc","imports":[]}],"tools":[{"name":"fastqc_single","description":"Run FastQC on a single FASTQ/FASTA file. Parameters: input_file (required), threads (optional), contaminants (optional), adapters (optional), limits (optional). Returns detailed QC report with pass/warn/fail status for each module."},{"name":"fastqc_batch","description":"Run FastQC on multiple files in a directory. Parameters: input_dir (required), file_pattern (optional), threads (optional). Processes all files and returns summary statistics."},{"name":"multiqc_report","description":"Generate MultiQC report from FastQC results. Parameters: input_dir (required), title (optional), comment (optional), template (optional). Generates interactive HTML report combining all analyses."},{"name":"fastqc_single_async","description":"Queue single file analysis for large datasets or batch processing."},{"name":"fastqc_batch_async","description":"Queue batch analysis for large datasets or batch processing."},{"name":"multiqc_report_async","description":"Queue report generation for large datasets or batch processing."},{"name":"get_job_status","description":"Check job progress in the queue system."},{"name":"get_job_result","description":"Retrieve completed results from the queue system."},{"name":"cancel_job","description":"Cancel running jobs in the queue system."}],"env_vars":["BIO_MCP_QUEUE_URL"],"auth_type":"none","github":"https://github.com/bio-mcp/bio-mcp-fastqc","homepage":"","server_url":"","status":"active","source":"mcpservers.org","updated_at":"Thu May 28"}