Biomart MCP

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Interface with Biomart, a biological data query tool, using the pybiomart Python package.

Install

npx -y @smithery/cli

list_marts List available marts in the Biomart database
list_datasets List available datasets for a given mart
get_attributes View common or all available attributes for a specific dataset
get_filters View common or all available filters for a specific dataset
query_biomart Query Biomart with specific attributes and filters to get biological data
translate_ids Convert between different biological identifiers (e.g., gene symbols to Ensembl IDs)

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